FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486955

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486955
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20929617
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGAGCCT1858855788.81460659313547No Hit
GTGAGCCT7132103.4076591081432595No Hit
NTGAGCCT7060493.373444435223062No Hit
ATGAGCCT2273311.0861689442286497No Hit
CTGAGCCT2109921.0081025371845074No Hit
TTGAGCCG437140.20886192040685692No Hit
TGGAGCCT428930.20493924948554962No Hit
TTGGGCCT383050.18301816034187343No Hit
TTGAGGCT364910.1743510165522857No Hit
TTTAGCCT338370.16167042139375987No Hit
TTGAGCCC337600.16130252168494053No Hit
TTGCGCCT321600.15365785241077273No Hit
TTGAGCCA267390.12775675732623296No Hit
TTGATCCT210670.10065640474930812No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)