FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486956

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486956
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21010196
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGAGCCT1799178685.63359427965355No Hit
GTGAGCCT10073344.7945007271707505No Hit
NTGAGCCT7949923.7838390465276954No Hit
ATGAGCCT5133172.4431804443899523No Hit
CTGAGCCT3684221.7535390912107627No Hit
TTGAGCCG299570.1425831534365505No Hit
TGGAGCCT286950.13657654597796232No Hit
TTGGGCCT256590.12212641900151716No Hit
TTGAGCCC245570.11688134656145045No Hit
TTTAGCCT239390.11393991755241122No Hit
TTGATCCT220070.10474438220376431No Hit
TTGCGCCT217380.10346405145387506No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)