FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486957

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486957
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18037597
Sequences flagged as poor quality0
Sequence length151
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTACGCG10050.080.780489
TTTGCGC29200.077.976771
TGCGCGA26650.077.4966051
CGCCGAA28450.075.928171
ACGACCG28100.071.160291
CGGTACG29350.070.3674551
TTACCCG34300.069.574031
CCGCTAT35750.068.385221
GACGCGT27650.068.359381
GCGCTAG30600.067.0159761
TAGGCGC33850.065.540291
TCGCGAT24650.065.282298
AACGCGT26400.064.525013
GTGCGAC33100.064.3796161
ATAACGC34350.064.161381
CGACACG34650.063.8164831
CGAACGC34800.063.5414121
CGAACTA38800.063.3857571
CCTTACG33850.063.168771
TCACGCG29650.063.074578
Produced by FastQC (version 0.11.5)