FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486963

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486963
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16538315
Sequences flagged as poor quality0
Sequence length8
%GC36

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATGCTTA1482716589.6534199523954No Hit
NATGCTTA6549703.9603188111969083No Hit
TATGCTTA3086151.8660607202124277No Hit
GATGCTTA2152021.301232924877776No Hit
AATGCTTA1780961.0768690764446076No Hit
CATGCGTA507480.3068510909364104No Hit
CATGCTAA347760.21027535150950988No Hit
CGTGCTTA309920.18739514878027175No Hit
CAGGCTTA279750.16915266156195477No Hit
CNTGCTTA255850.15470137072609874No Hit
CATGCCTA246530.14906597195663523No Hit
CATGCTGA234980.14208218914683873No Hit
CCTGCTTA192120.1161666106855505No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)