FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486968

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486968
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20458072
Sequences flagged as poor quality0
Sequence length8
%GC60

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCCAGA1573005876.88924938772334No Hit
TGTCCAGA19698659.628791021949674No Hit
AGTCCAGA9495304.641346457281018No Hit
NGTCCAGA7992833.9069321879402907No Hit
CGTCCAGA7412403.6232153254715302No Hit
GGGCCAGA483090.23613662128083232No Hit
GGCCCAGA267960.13098008453582527No Hit
GGTCCAGC204660.10003875242984774No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)