FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486969

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486969
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16466568
Sequences flagged as poor quality0
Sequence length8
%GC36

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATGCTTA1409173185.57782653920356No Hit
NATGCTTA7085304.302839547378665No Hit
TATGCTTA5412353.2868719213378284No Hit
AATGCTTA4940343.0002244547862067No Hit
GATGCTTA3648142.215482910585861No Hit
CATGCGTA345310.20970368567390607No Hit
CATGCTAA327550.19891819594708504No Hit
CAGGCTTA253440.15391185339895963No Hit
CATGCTGA181640.11030835326462683No Hit
CGTGCTTA177860.10801279295114806No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)