FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486972

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486972
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17396220
Sequences flagged as poor quality0
Sequence length151
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGCGCGA24850.085.4731141
TTACGCG10200.076.747689
CGCCGAA26250.075.909521
ACGACCG26100.074.388211
TTTGCGC28500.074.270451
CGGTACG29750.071.149851
GTGCGAC30500.068.921641
GACGCGT27650.067.050421
GCGCGTA32050.066.727141
GCGCTAG29600.066.578651
CCGCTAT33400.066.215411
GTCGGAC25900.065.9445651
GGCGACT34050.065.5944751
AACCGCG33400.063.811551
CGAACGC33650.063.771291
CGAACTA35300.063.6852651
TCACGCG25400.063.6381848
TAGGCGC32650.063.488941
CGTTGCG14500.062.9867487
GTTACCG25800.062.93258
Produced by FastQC (version 0.11.5)