FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486976

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486976
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18362234
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATCCT1571291585.57191352642603No Hit
NACATCCT7879494.291139084710498No Hit
TACATCCT6025823.28163773536488No Hit
AACATCCT5520123.006235515787458No Hit
GACATCCT4067672.2152369913159804No Hit
CACATCCA505500.2752933003685717No Hit
CACAGCCT346740.18883323238337993No Hit
CGCATCCT209840.11427803392550166No Hit
CACATGCT203190.11065647023123658No Hit
CACATCCG189210.10304301753261613No Hit
CCCATCCT188860.1028524089171285No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)