FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486979

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486979
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18493072
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATCCT1604938186.78591096168337No Hit
NACATCCT7237393.913568281137931No Hit
TACATCCT5609903.0335143885234426No Hit
AACATCCT4812162.6021420345954422No Hit
GACATCCT3702352.0020199997058357No Hit
CACATCCA522940.28277616612318385No Hit
CACAGCCT336730.18208440436505086No Hit
CGCATCCT249560.1349478334373002No Hit
CCCATCCT199680.10797557052716823No Hit
CACATCCG190590.10306021627991281No Hit
CACATGCT190120.10280606705040678No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)