FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486982

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486982
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14885284
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCGCTGA1192953180.14311987597952No Hit
GTCGCTGA9474856.36524637353241No Hit
ATCGCTGA6839524.594819957751562No Hit
NTCGCTGA5827793.915135243640632No Hit
CTCGCTGA5635623.7860345828806494No Hit
TTCGCTAA222190.14926823028704053No Hit
TTCGCTGG188060.12633954447896326No Hit
TTCGCTGC186530.12531168367362022No Hit
TTCGCGGA180180.12104572542922258No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)