FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486989

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486989
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14623071
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCGCTGA1050972371.87083342479839No Hit
ATCGCTGA11963838.181475696862854No Hit
GTCGCTGA11436647.820956350413671No Hit
CTCGCTGA9054636.1920167111272315No Hit
NTCGCTGA6182714.228051686270278No Hit
TTCGCGGA251900.17226203716032015No Hit
TTCGCTAA246580.16862395046840709No Hit
TTCGCTGC242650.16593641650238858No Hit
TTCGCTGG220080.15050190209703557No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)