FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486993

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486993
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17380316
Sequences flagged as poor quality0
Sequence length8
%GC38

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGATCTA1502387486.44189208067333No Hit
NGGATCTA6809633.91801276800721No Hit
TGGATCTA5699963.279549117518922No Hit
CGGATCTA4191602.4116937804813214No Hit
GGGATCTA3822082.19908544815871No Hit
AGGAGCTA448650.25813684860505415No Hit
AGGGTCTA337990.19446712016053103No Hit
AGGATGTA259320.1492032711027809No Hit
AGGCTCTA207190.11920957018272856No Hit
AGGTTCTA181880.10464711918931739No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)