FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005487002

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005487002
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15491315
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCGCTGA1310051684.56684277609745No Hit
GTCGCTGA8267405.336796779356691No Hit
NTCGCTGA6203114.004250123375582No Hit
ATCGCTGA3518652.271369473798706No Hit
CTCGCTGA3118992.0133797550433905No Hit
TTCGCGGA349730.2257587557931654No Hit
TTCGCTAA247500.15976694037917377No Hit
TNCGCTGA235830.15223368706917392No Hit
TTCGCTGC217240.14023341465847153No Hit
TGCGCTGA207850.1341719537689344No Hit
TTCGCTGG198540.12816213471871174No Hit
TTCGCCGA188090.12141641945825775No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)