FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005487006

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005487006
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19193852
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGCGA1729588990.11160969668829No Hit
NATAGCGA7649033.985145868583336No Hit
TATAGCGA3358631.7498467738523773No Hit
GATAGCGA2327741.2127529169236066No Hit
AATAGCGA2031411.0583649389398229No Hit
CGTAGCGA348160.1813914163764522No Hit
CATAGCGC307990.16046283987185062No Hit
CNTAGCGA297590.15504443818781138No Hit
CATAGGGA278720.14521316513225171No Hit
CATAGCGG248680.12956232026796916No Hit
CAGAGCGA214650.11183268475759842No Hit
CATAGCAA195600.10190763167289192No Hit
CATAGCGT192790.10044362121787748No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)