FastQCFastQC Report
Sat 11 May 2024
EGAF00005487593

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005487593
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21059547
Total Bases3.1 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGAATGTGTGGTAGGGTGGGGGGCATCCATATAGTCACTCCAGGTTTATG339140.1610386016375376No Hit
TTCGAATGTGTGGTAGGGTGGGGGGCATCCATATAGTCACTCCAGGTTTA316080.15008869848909856No Hit
CTTCGAATGTGTGGTAGGGTGGGGGGCATCCATATAGTCACTCCAGGTTT309550.14698796702512165No Hit
GGGGCATCCATATAGTCACTCCAGGTTTATGGAGGGTTCTTCTACTATTA274300.1302497152479111No Hit
CTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCGCATGA266020.12631800674534926No Hit
CAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGATCA240220.11406703097649727No Hit
CGTAAATCTAACTTTCTTCCCACAACACTTTCTCGGCCTATCCGGAATGC236350.11222938461116948No Hit
GTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGCCCTCCTAAT229240.10885324361440445No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)