FastQCFastQC Report
Sat 11 May 2024
EGAF00005487594

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005487594
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21059547
Total Bases3.1 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGAATGTGTGGTAGGGTGGGGGGCATCCATATAGTCACTCCAGGTTTATG325730.15467094330186684No Hit
TTCGAATGTGTGGTAGGGTGGGGGGCATCCATATAGTCACTCCAGGTTTA303680.14420063261569682No Hit
CTTCGAATGTGTGGTAGGGTGGGGGGCATCCATATAGTCACTCCAGGTTT288700.13708746916540987No Hit
GGGGCATCCATATAGTCACTCCAGGTTTATGGAGGGTTCTTCTACTATTA267490.1270160274577606No Hit
CTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCGCATGA257400.12222485127529095No Hit
CAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGATCA239760.11384860272635494No Hit
CGTAAATCTAACTTTCTTCCCACAACACTTTCTCGGCCTATCCGGAATGC229640.10904318122322385No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)