FastQCFastQC Report
Thu 9 May 2024
EGAF00005487711

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005487711
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26596500
Total Bases3.9 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCGCATGA357350.13435978418212924No Hit
GGGGCATCCATATAGTCACTCCAGGTTTATGGAGGGTTCTTCTACTATTA349990.13159250277292125No Hit
GTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGCCCTCCTAAT342890.12892297858740812No Hit
CTTCGAATGTGTGGTAGGGTGGGGGGCATCCATATAGTCACTCCAGGTTT310730.11683116199499935No Hit
CGAATGTGTGGTAGGGTGGGGGGCATCCATATAGTCACTCCAGGTTTATG299070.11244712650160735No Hit
CGTAAATCTAACTTTCTTCCCACAACACTTTCTCGGCCTATCCGGAATGC274740.10329930629970109No Hit
GGCAAATACAGCTCCTATTGATAGGACATAGTGGAAGTGAGCTACAACGT268920.10111104844622414No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)