FastQCFastQC Report
Thu 9 May 2024
EGAF00005487712

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005487712
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26596500
Total Bases3.9 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGCATCCATATAGTCACTCCAGGTTTATGGAGGGTTCTTCTACTATTA365060.13725866185400334No Hit
CTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCGCATGA345520.1299118305040137No Hit
CGAATGTGTGGTAGGGTGGGGGGCATCCATATAGTCACTCCAGGTTTATG312310.1174252251236065No Hit
CTTCGAATGTGTGGTAGGGTGGGGGGCATCCATATAGTCACTCCAGGTTT303990.11429699396537138No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)