FastQCFastQC Report
Fri 10 May 2024
EGAF00005487854

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005487854
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28512689
Total Bases4.2 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGATCA378860.1328741740212577No Hit
CTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCGCATGA373050.13083648476648413No Hit
CTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCT322300.11303739187840192No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)