FastQCFastQC Report
Sun 12 May 2024
EGAF00005487923

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005487923
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34823250
Total Bases5.2 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGATCA403830.1159656264133876No Hit
GTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGCCCTCCTAAT375760.10790491984521836No Hit
CTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCGCATGA375600.10785897353061533No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)