FastQCFastQC Report
Thu 9 May 2024
EGAF00005488014

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005488014
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26350727
Total Bases3.9 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGATCA280120.10630446742513025No Hit
CTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCGCATGA276870.10507110486932675No Hit
GGGGCATCCATATAGTCACTCCAGGTTTATGGAGGGTTCTTCTACTATTA270660.10271443364731456No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)