FastQCFastQC Report
Thu 9 May 2024
EGAF00005488033

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005488033
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29183580
Total Bases4.3 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGCCCTCCTAAT486000.16653200189969838No Hit
CGAATGTGTGGTAGGGTGGGGGGCATCCATATAGTCACTCCAGGTTTATG367640.1259749489267595No Hit
TTCGAATGTGTGGTAGGGTGGGGGGCATCCATATAGTCACTCCAGGTTTA355270.12173626402244002No Hit
CTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCGCATGA320440.10980147055296163No Hit
CAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGATCA300650.1030202600229307No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)