FastQCFastQC Report
Thu 9 May 2024
EGAF00005488034

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005488034
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29183580
Total Bases4.3 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGAATGTGTGGTAGGGTGGGGGGCATCCATATAGTCACTCCAGGTTTATG373040.1278253045034228No Hit
TTCGAATGTGTGGTAGGGTGGGGGGCATCCATATAGTCACTCCAGGTTTA362970.12437473401138587No Hit
GTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGCCCTCCTAAT331030.11343022343386247No Hit
CAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGATCA306440.10500425239124192No Hit
CTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCGCATGA304260.10425725699177413No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)