FastQCFastQC Report
Thu 9 May 2024
EGAF00005488061

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005488061
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24824170
Total Bases3.7 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGCCCTCCTAAT297350.11978245395515741No Hit
CTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCGCATGA285060.11483163384717394No Hit
CGAATGTGTGGTAGGGTGGGGGGCATCCATATAGTCACTCCAGGTTTATG262500.1057437167083532No Hit
TTCGAATGTGTGGTAGGGTGGGGGGCATCCATATAGTCACTCCAGGTTTA252170.10158244968512542No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)