EGAF00005488074 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005488074
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	25025333
Sequences flagged as poor quality	0
Sequence length	76
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAACGCACAGTGTAGATCT	253006	1.0109995339522555	Illumina Single End PCR Primer 1 (96% over 33bp)
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAACGCACAGTGTAGATC	90064	0.35989131493275234	Illumina Single End PCR Primer 1 (97% over 34bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCGTCGT	45045	43.428387	11
GCCGTAT	46090	43.16548	59
CGTCGTG	45255	43.164993	12
TAACGCA	46435	43.11001	32
AACGCAC	46910	42.94927	33
TCGCCGT	46325	42.94788	57
CGTATCA	46525	42.823605	61
GTAACGC	46960	42.7622	31
TCGTGTA	45470	42.55299	14
AGCGTCG	46635	42.360184	10
CGCCGTA	47380	42.3535	58
TGGTCGC	47525	41.915497	54
CCGTATC	47570	41.81499	60
GTCGCCG	48165	41.772705	56
GTCGTGT	46540	41.747604	13
TGTAACG	47450	41.492317	30
GTGTAAC	48490	40.566067	29
ACGCACA	49690	40.504375	34
AGAGCGT	49120	40.30475	8
GGTCGCC	49930	40.183918	55