FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005488089

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005488089
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29040241
Sequences flagged as poor quality0
Sequence length76
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATGC336500.043.34639755
TATGCCG337100.043.18619557
TCGTATG338100.043.18267454
CTCGTAT336300.043.0495953
TCTCGTA333300.042.27161452
ATCTCGT341500.041.2461451
ATGCCGT365700.039.75135458
CCGTCTT372100.038.56918761
TGCCGTC378050.038.38797459
GCCGTCT375900.038.33755560
ACACGTC415850.036.74135613
CGTCTTC396700.036.24802462
GTATGCC405650.036.1125556
GCTTGAA400150.036.07109570
CACGTCT435900.035.0674314
ACGTCTG439450.034.80006815
CGTCTGA439450.034.7841416
TATCTCG99250.034.7307350
GATCGGA445350.034.593681
GCACACG457300.033.5258811
Produced by FastQC (version 0.11.5)