EGAF00005488090 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005488090
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	29040241
Sequences flagged as poor quality	0
Sequence length	76
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTGTGTCCTTGTGTAGATCT	199306	0.6863097313827389	Illumina Single End PCR Primer 1 (96% over 32bp)
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTGTGTCCTTGTGTAGATC	55932	0.1926017074031858	Illumina Single End PCR Primer 1 (96% over 33bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCCGTAT	30560	48.26689	59
CGCCGTA	30875	48.071045	58
TCGCCGT	30915	47.88433	57
CGTATCA	30990	47.666885	61
TGGTCGC	31990	46.319286	54
GTCGCCG	32540	45.69771	56
CCGTATC	32360	45.64689	60
GGTCGCC	33725	44.143913	55
GTGGTCG	33920	43.662777	53
TCGTGTA	34435	42.642803	14
CGTCGTG	34550	42.592022	12
GCGTCGT	34830	42.38024	11
AGCGTCG	35050	42.27369	10
GTCGTGT	34945	42.080544	13
GTAGATC	35880	41.417606	43
TCGGTGG	35975	41.392513	50
CGTGTAG	35815	41.12504	15
GATCTCG	36510	40.683117	46
GTATCAT	36515	40.6092	62
CGGTGGT	36705	40.502544	51