FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005488095

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005488095
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23688076
Sequences flagged as poor quality0
Sequence length76
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGATCGG898500.049.1930121
TCTCGTA1042300.038.11435753
GATCGGA1162400.038.1001472
CTCGTAT1080150.037.96132354
ATCTCGT1046400.037.95498752
TCGTATG1078550.037.8846155
CGTATGC1078800.037.83365656
TATGCCG1073850.037.65609758
AGTCACG1162600.037.4102729
GTCACGT1163250.037.26301630
ATGCCGT1072600.037.24647559
CCGTCTT1066050.036.86802362
GCTTGAA507750.036.7881270
TCACGTG1178900.036.77428431
TGCCGTC1080700.036.73739260
GCCGTCT1077250.036.67312661
CGTGGAT1186600.036.46766334
TGGATAG1188700.036.36534536
ACACGTC1213200.036.17790214
CGTCTTC1084000.036.15744463
Produced by FastQC (version 0.11.5)