EGAF00005488096 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005488096
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	23688076
Sequences flagged as poor quality	0
Sequence length	76
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTTCACCTAGGTGTAGATC	543566	2.2946819319559766	Illumina Single End PCR Primer 1 (96% over 33bp)
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTTCACCTAGGTGTAGATCT	257482	1.0869688192489757	Illumina Single End PCR Primer 1 (96% over 32bp)
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTTCACCTAGGTGTAGATCTC	26477	0.11177353534326721	Illumina Single End PCR Primer 1 (96% over 31bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
AGATCGG	75955	54.923927	1
GCCGTAT	100240	42.325985	60
TCGCCGT	100620	42.25844	58
CGTATCA	100470	42.19461	62
TGGTCGC	101290	41.993443	55
GTCGCCG	102110	41.936546	57
CGCCGTA	102285	41.70556	59
CCGTATC	102165	41.510117	61
ACCTAGG	101005	41.377033	36
GCGTCGT	101300	41.18959	12
TCACCTA	101695	41.148167	34
CACCTAG	101825	41.074757	35
CGTCGTG	101725	40.96246	13
AGCGTCG	103130	40.760704	11
GTATCAT	103660	40.7377	63
GTGGTCG	104740	40.590183	54
GGTCGCC	105335	40.570217	56
GATCGGA	103345	40.530674	2
GTAGATC	105300	40.499855	44
TCGGTGG	105450	40.469296	51