EGAF00005488098 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005488098
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	21662058
Sequences flagged as poor quality	0
Sequence length	76
%GC	50

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTCATCTGCTGTGTAGATCT	143398	0.6619777308324075	Illumina Single End PCR Primer 1 (96% over 32bp)
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTCATCTGCTGTGTAGATC	25178	0.11623087704778556	Illumina Single End PCR Primer 1 (96% over 33bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCCGTA	22375	49.064823	58
TCGCCGT	22265	49.054832	57
TGGTCGC	22435	48.934166	54
GCCGTAT	22410	48.833046	59
CGTATCA	22480	48.63428	61
GTCGCCG	23285	47.374184	56
GCGTCGT	23735	45.587517	11
CCGTATC	24090	45.44224	60
CGTCGTG	23770	45.152866	12
GGTCGCC	25145	43.869263	55
GTGGTCG	25115	43.865417	53
TCGTGTA	24705	43.372154	14
AGAGCGT	25300	43.002815	8
GTATCAT	25775	42.634068	62
GTCGTGT	25285	42.48857	13
GTAGATC	25965	42.23839	43
GAGTGTC	25665	42.177464	27
AAGAGCG	26270	41.70822	7
TCGGTGG	26615	41.353752	50
AGCGTCG	26655	41.066223	10