EGAF00005488108 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005488108
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	25810206
Sequences flagged as poor quality	0
Sequence length	76
%GC	51

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTCTAGGTTGGTGTAGATCT	103691	0.4017441782525874	Illumina Single End PCR Primer 1 (96% over 32bp)
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTCTAGGTTGGTGTAGATC	28184	0.10919711373090166	Illumina Single End PCR Primer 1 (96% over 33bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTATCA	18635	42.818367	61
TCGCCGT	19205	41.637913	57
CGCCGTA	19720	40.515335	58
TGGTCGC	19720	40.46233	54
GCCGTAT	19890	40.151848	59
GCGTCGT	20225	39.605682	11
GTGTCTA	20130	38.752842	29
GTCGCCG	20845	38.464382	56
CGTCGTG	20900	38.176083	12
CCGTATC	21320	37.458805	60
AGAGCGT	21920	36.846367	8
GTATCAT	21935	36.59973	62
TCTAGGT	21460	36.44747	32
TCGTGTA	21880	36.257698	14
CTAGGTT	21620	36.1626	33
GAGTGTC	21750	35.9622	27
GTGGTCG	22710	35.366074	53
GGTCGCC	22770	35.27322	55
GTCGTGT	22595	35.203484	13
GTAGATC	22990	35.101635	43