EGAF00005488110 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005488110
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	26919884
Sequences flagged as poor quality	0
Sequence length	76
%GC	51

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTGCGTTAGAGTGTAGATCT	160463	0.5960761197930868	Illumina Single End PCR Primer 1 (96% over 32bp)
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTGCGTTAGAGTGTAGATC	51607	0.19170587807882086	Illumina Single End PCR Primer 1 (96% over 33bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCGTTAG	25770	47.531895	33
CGTTAGA	26300	46.627342	34
TGCGTTA	26805	45.721256	32
CGCCGTA	27315	45.432076	58
CGTATCA	27350	45.297752	61
TGGTCGC	27940	44.490532	54
GTGCGTT	27955	43.865265	31
TCGCCGT	28480	43.52416	57
GCCGTAT	28890	42.93166	59
GTCGCCG	29210	42.581707	56
GTGTGCG	29325	42.008793	29
TCGTGTA	29150	41.632812	14
GGTCGCC	30110	41.424072	55
GCGTCGT	29945	40.88994	11
CCGTATC	30390	40.778156	60
TGTGCGT	30090	40.731415	30
GTGGTCG	30880	40.446995	53
GTCGTGT	30195	40.24999	13
TAGAGTG	30805	40.079468	37
CGTCGTG	30640	39.87137	12