EGAF00005488112 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005488112
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	28384182
Sequences flagged as poor quality	0
Sequence length	76
%GC	50

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGGCAATGGTGTAGATCT	562747	1.982607777810895	Illumina Single End PCR Primer 1 (97% over 34bp)
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGGCAATGGTGTAGATC	46051	0.16224177254782257	Illumina Single End PCR Primer 1 (97% over 35bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTATCA	73415	57.89509	61
TCGCCGT	73700	57.66979	57
GCCGTAT	73710	57.668438	59
TGGTCGC	73775	57.564228	54
CGCCGTA	73940	57.55893	58
GCGTCGT	73195	57.424156	11
CGTCGTG	73300	57.118225	12
GTCGCCG	74805	56.890385	56
TCGTGTA	74100	56.193798	14
CCGTATC	76160	55.82708	60
GTCGTGT	74830	55.809574	13
AGAGCGT	76535	55.484932	8
GTGGTCG	76910	55.221764	53
GGTCGCC	77115	55.21662	55
GAGTGTA	75585	54.978966	27
GTATCAT	77745	54.733555	62
GTAGATC	77605	54.535614	43
AGCGTCG	78130	54.320873	10
CGTGTAG	76985	54.24704	15
TAGGCAA	77490	54.226143	32