FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005490149

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005490149
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36983558
Sequences flagged as poor quality0
Sequence length35-80
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAATGCG6400.00577750157.92291474
CCTTTCG100250.07.24982974
CTCGTAT17503.623336E-76.438939674
AATCGCG14503.9014016E-56.21690774
TATGCCG25401.7598632E-65.101719474
AACTCGT30006.939263E-85.070665474
Produced by FastQC (version 0.11.5)