FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005490179

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005490179
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19987442
Sequences flagged as poor quality0
Sequence length80
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGTAT9102.001052E-56.506903672
CGAAATA10702.0964324E-45.533770669
TGCGATA9050.0053108075.316068672
TGCGAAA43500.05.274626371
CGAAATG22654.638423E-105.228531474
TCGTATG16301.1104985E-65.221989672
GTGCGAA50150.05.165651374
Produced by FastQC (version 0.11.5)