FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005490185

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005490185
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24566953
Sequences flagged as poor quality0
Sequence length80
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATGC28050.07.784408674
TCGTATG24150.07.0490973
TATGCCG20550.06.483315574
CGATAGA9403.2197593E-56.29918673
CTCGTAT13904.50691E-86.12357973
ATCGTAT20252.4192559E-85.117221472
Produced by FastQC (version 0.11.5)