FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005490258

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005490258
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31570794
Sequences flagged as poor quality0
Sequence length80
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTGTAG290700.07.32070474
TCGTGTA327650.07.20676874
GTCGTGT364850.06.989320874
GCGTCGT473650.06.735654474
CGTCGTG479100.06.18007774
GTGTAGG350850.06.128930674
AGAGCGT665550.06.03363674
AAGAGCG798900.05.679735774
CGGAAGA1015000.05.55346474
GAGCGTC652400.05.525544674
GATCGGA1175500.05.47843774
AGATCGG1311400.05.43282474
AGCGTCG648500.05.32478174
ATCGGAA1131500.05.32185574
TCGGAAG1088000.05.177481773
TAGGGAA261200.05.17189674
TAGATCG397250.05.059015374
GAAGAGC1027200.05.044325474
Produced by FastQC (version 0.11.5)