FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005490319

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005490319
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29215346
Sequences flagged as poor quality0
Sequence length80
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCGTAA3300.0072466858.970118568
TATGCCG24000.07.091660573
CTAATCG14858.913048E-116.727600669
ACGTTCG5600.0098479566.607634540
CGTATGC38650.06.318094374
TCGTATG29700.06.229227570
CTCGTAT20403.6379788E-125.98528973
CGCATAG26850.05.51232671
ATAATCG19606.161463E-85.097065472
Produced by FastQC (version 0.11.5)