FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005490356

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005490356
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20433519
Sequences flagged as poor quality0
Sequence length20-80
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTACAA7600.00373795865.948723361
GGCGCAT29603.92758E-75.50168374
CGTCGAT8150.0090073915.49448457
ATCGCGG24851.9399224E-55.413606674
CGCATAT17753.002042E-75.33568370
ATTGCCG42800.05.165302373
Produced by FastQC (version 0.11.5)