FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005490357

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005490357
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15799209
Sequences flagged as poor quality0
Sequence length20-80
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATTGCCG29401.0913936E-116.701477574
TCGTATG11451.370102E-46.10854273
CGAGCAT15100.0017117945.84906374
GGCGCAT18951.2515423E-45.73628474
ACGTATG15957.451381E-55.26215473
Produced by FastQC (version 0.11.5)