FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005490368

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005490368
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35829909
Sequences flagged as poor quality0
Sequence length35-80
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCTTTCG88350.07.917671774
ATTGCCG43450.07.05187774
CGCATAT23251.085049E-65.470391874
ATCGATT31402.0290827E-85.15521874
CGATCGT12202.8349756E-45.1019535
Produced by FastQC (version 0.11.5)