FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005490371

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005490371
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23411003
Sequences flagged as poor quality0
Sequence length80
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG20800.08.71601474
CTCGTAT18150.08.56198673
TCGTATG29600.08.49967674
CGTATGC34850.07.856228474
TATCGTA9659.2613664E-76.90180771
CGATCGT13058.499046E-86.2372175
ATCGTAT21400.06.051171374
CGATCGA12103.661555E-55.5034649
TCGATCG15051.3500103E-65.4083514
CGTATGG11751.3825881E-45.35298774
TCTCGTA20304.6802597E-95.28585172
Produced by FastQC (version 0.11.5)