FastQCFastQC Report
Thu 12 May 2022
EGAF00005490647

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005490647
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences402554700
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACCTGCC13204470632.80168036791025No Hit
TGATGCAT10258672025.483920570297652No Hit
GCTACTGA8588274821.334429333454562No Hit
ATGGAATG8204052620.379969728337542No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)