FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005490649

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005490649
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences92805042
Sequences flagged as poor quality0
Sequence length8
%GC55

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCGGCTC3083961933.230542581942906No Hit
CGTCCTAG2641301928.460758629902887No Hit
GAGTTAGT2038228221.96247268548189No Hit
TTAAAGCA1517012216.346226102672308No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)