FastQCFastQC Report
Wed 8 May 2024
EGAF00005490891

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005490891
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences78270
Total Bases23.5 Mbp
Sequences flagged as poor quality0
Sequence length301
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTATCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCC1170.14948256036795707No Hit
TTAACCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCC1120.14309441676248882No Hit
CTCACCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCC1110.14181678804139516No Hit
TTTTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCC1080.1379839018781142No Hit
TCCACCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCC1030.13159575827264597No Hit
TCATCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCC1020.1303181295515523No Hit
TTCACCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCC1020.1303181295515523No Hit
ACTACCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCC1000.12776287210936502No Hit
CTTACCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCC990.12648524338827138No Hit
CTATCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCC990.12648524338827138No Hit
ATCACCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCC980.12520761466717772No Hit
TTCTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCC970.12392998594608408No Hit
TCAACCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCC970.12392998594608408No Hit
ATAACCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCC960.12265235722499042No Hit
TGGTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCC960.12265235722499042No Hit
CTCTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCC960.12265235722499042No Hit
TTGTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCC950.12137472850389677No Hit
CTAACCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCC950.12137472850389677No Hit
GTCACCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCC940.12009709978280311No Hit
ATCTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCC940.12009709978280311No Hit
TTTACCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCC940.12009709978280311No Hit
AAATCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCC930.11881947106170948No Hit
CAATCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCC920.1175418423406158No Hit
TCACCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCC910.11626421361952217No Hit
CTTTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCC910.11626421361952217No Hit
GTATCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCC910.11626421361952217No Hit
CTGTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCC910.11626421361952217No Hit
TAAACCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCC910.11626421361952217No Hit
GTTTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCC900.11498658489842851No Hit
TAGTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCC900.11498658489842851No Hit
CTACCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCC890.11370895617733487No Hit
CCATCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCC890.11370895617733487No Hit
CAAACCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCC890.11370895617733487No Hit
TATTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCC890.11370895617733487No Hit
TACACCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCC880.11243132745624121No Hit
ATTTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCC870.11115369873514758No Hit
ATACCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCC870.11115369873514758No Hit
TAATCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCC860.10987607001405392No Hit
ACAACCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCC850.10859844129296027No Hit
ATTACCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCC850.10859844129296027No Hit
CACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCC850.10859844129296027No Hit
TCCTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCC850.10859844129296027No Hit
TACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCC850.10859844129296027No Hit
TCTCCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCC850.10859844129296027No Hit
ATATCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCC850.10859844129296027No Hit
CATACCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCC830.10604318385077298No Hit
CCAACCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCC830.10604318385077298No Hit
ACCACCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCC830.10604318385077298No Hit
TGGACCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCC830.10604318385077298No Hit
CCCACCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCC820.10476555512967932No Hit
GTGTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCC810.10348792640858567No Hit
GAAACCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCC810.10348792640858567No Hit
TTGACCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCC810.10348792640858567No Hit
TTACCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCC810.10348792640858567No Hit
TCTTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCC810.10348792640858567No Hit
CACACCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCC800.10221029768749201No Hit
TCTACCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCC800.10221029768749201No Hit
CCCTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCC800.10221029768749201No Hit
ATTCCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCC800.10221029768749201No Hit
GTTACCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCC800.10221029768749201No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)