FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005490975

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005490975
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences76617
Sequences flagged as poor quality0
Sequence length301
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTCCCTA1250.0295.000032
GGGCCTA950.0295.000032
GCCCCTA900.0295.02
ATGGGGT108.449638E-4295.0295
TTCTACG108.449638E-4295.03
GTCGCCT206.1474566E-8295.01
CGAACCT108.449638E-4295.01
GCGACCT350.0295.01
GATCCTC108.449638E-4295.02
CGACCTA1000.0295.02
GTTACCT400.0295.01
AGTGCCT206.1474566E-8295.01
TACGCCT350.0295.01
CGCTCCT650.0295.01
CGGGCCT350.0295.01
GGAACCT255.2568794E-10295.01
TCGTCCT450.0295.01
CTACCGG108.449638E-4295.06
GGCGCCT206.1474566E-8295.01
GGACCCT400.0295.01
Produced by FastQC (version 0.11.5)