FastQCFastQC Report
Wed 8 May 2024
EGAF00005491167

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005491167
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences78144
Total Bases23.5 Mbp
Sequences flagged as poor quality0
Sequence length301
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TAAACCTACGGGAGGCAGCAGTGGGGAATTTTGGACAATGGGGGCAACCC890.1138923013923014No Hit
TCATCCTACGGGAGGCAGCAGTGGGGAATTTTGGACAATGGGGGCAACCC880.11261261261261261No Hit
ACATCCTACGGGAGGCAGCAGTGGGGAATTTTGGACAATGGGGGCAACCC850.10877354627354628No Hit
CACACCTACGGGAGGCAGCAGTGGGGAATTTTGGACAATGGGGGCAACCC800.10237510237510238No Hit
CAATCCTACGGGAGGCAGCAGTGGGGAATTTTGGACAATGGGGGCAACCC800.10237510237510238No Hit
TTCTCCTACGGGAGGCAGCAGTGGGGAATTTTGGACAATGGGGGCAACCC790.10109541359541359No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)