FastQCFastQC Report
Wed 8 May 2024
EGAF00005491203

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005491203
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences58049
Total Bases17.4 Mbp
Sequences flagged as poor quality0
Sequence length301
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAATCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGAAACCC740.12747850953504797No Hit
CTAACCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGAAACCC670.11541973160605695No Hit
TTAACCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGAAACCC660.11369704904477251No Hit
ACCACCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGAAACCC620.10680631879963479No Hit
TTCACCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGAAACCC600.10336095367706592No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)