FastQCFastQC Report
Wed 8 May 2024
EGAF00005491237

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005491237
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences68411
Total Bases20.5 Mbp
Sequences flagged as poor quality0
Sequence length301
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCACCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGAAACCC760.11109324523833886No Hit
TCCACCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGAGAGCC730.10670798555787812No Hit
TCAACCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGAAACCC720.10524623233105787No Hit
TCCACCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGAAACCC700.10232272587741738No Hit
TTATCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGAAACCC690.10086097265059712No Hit
CTCTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGAAACCC690.10086097265059712No Hit
TAATCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGAAACCC690.10086097265059712No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)