FastQCFastQC Report
Wed 8 May 2024
EGAF00005491311

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005491311
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences98534
Total Bases29.6 Mbp
Sequences flagged as poor quality0
Sequence length301
%GC44

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTATCCTACGGGAGGCAGCAGGACTAGGGGGTTGGGGACAGATTTTATTG1150.11671098301094039No Hit
ATATCCTACGGGAGGCAGCAGGACTAGGGGGTTGGGGACAGATTTTATTG1090.1106217143321087No Hit
TCAACCTACGGGAGGCAGCAGGACTAGGGGGTTGGGGACAGATTTTATTG1070.10859195810583148No Hit
ATAACCTACGGGAGGCAGCAGGACTAGGGGGTTGGGGACAGATTTTATTG1070.10859195810583148No Hit
TTACCCTACGGGAGGCAGCAGGACTAGGGGGTTGGGGACAGATTTTATTG1060.10757707999269286No Hit
CTCACCTACGGGAGGCAGCAGGACTAGGGGGTTGGGGACAGATTTTATTG1050.10656220187955426No Hit
CTTTCCTACGGGAGGCAGCAGGACTAGGGGGTTGGGGACAGATTTTATTG1050.10656220187955426No Hit
TCATCCTACGGGAGGCAGCAGGACTAGGGGGTTGGGGACAGATTTTATTG1050.10656220187955426No Hit
GTAACCTACGGGAGGCAGCAGGACTAGGGGGTTGGGGACAGATTTTATTG1040.10554732376641565No Hit
TACTCCTACGGGAGGCAGCAGGACTAGGGGGTTGGGGACAGATTTTATTG1040.10554732376641565No Hit
TATTCCTACGGGAGGCAGCAGGACTAGGGGGTTGGGGACAGATTTTATTG1040.10554732376641565No Hit
CTTACCTACGGGAGGCAGCAGGACTAGGGGGTTGGGGACAGATTTTATTG1030.10453244565327705No Hit
TTCTCCTACGGGAGGCAGCAGGACTAGGGGGTTGGGGACAGATTTTATTG1020.10351756754013842No Hit
TTCACCTACGGGAGGCAGCAGGACTAGGGGGTTGGGGACAGATTTTATTG1020.10351756754013842No Hit
GTATCCTACGGGAGGCAGCAGGACTAGGGGGTTGGGGACAGATTTTATTG1010.10250268942699982No Hit
CTACCCTACGGGAGGCAGCAGGACTAGGGGGTTGGGGACAGATTTTATTG1000.10148781131386121No Hit
TCCACCTACGGGAGGCAGCAGGACTAGGGGGTTGGGGACAGATTTTATTG1000.10148781131386121No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)